TODO

  1. CV of reps
  2. ICC
  3. min diff
  4. max diff
REPLICATE NUMBER_FCS_FILES
_panel2 22
A_panel1 42
A_panel2 28
B_panel1 22
B_panel2 12
C_panel1 34
C_panel2 18
D_panel1 26
D_panel2 12
E_panel1 32
E_panel2 18
F_panel1 48
F_panel2 30
G_panel1 38
G_panel2 24
H_panel1 32
H_panel2 18

Prop of files with lymph counts > 50K = 0.9709101 Prop of files with lymph counts < 50K = 0.0290899

Total number of Control fcs files (currently) = 228

Total number of Control groups (currently) = 17

Percent of parent CV summary

GROUP GROUP_MEDIAN_CV GROUP_MAD_CV
_panel2 32.52019 38.260513
A_panel1 12.20578 11.082615
A_panel2 29.33195 33.163277
B_panel1 10.76501 7.605525
B_panel2 19.68432 16.786948
C_panel1 12.82536 10.039333
C_panel2 11.11351 5.616338
D_panel1 21.92303 13.082674
D_panel2 22.73467 20.182015
E_panel1 25.12323 17.641241
E_panel2 14.36604 15.351661
F_panel1 20.39913 21.866917
F_panel2 17.83741 20.281833
G_panel1 13.91622 13.134659
G_panel2 18.58631 18.207699
H_panel1 14.30045 15.323726
H_panel2 28.06433 29.012563

Percent of base population (lymph/PBMC) CV summary

GROUP GROUP_MEDIAN_CV GROUP_MAD_CV
_panel2 63.63640 78.22637
A_panel2 45.10160 54.38206
B_panel2 37.98665 48.88351
C_panel2 27.82104 29.12217
D_panel2 39.58664 47.96504
E_panel2 30.12134 35.42778
F_panel2 20.71549 26.36199
G_panel2 35.27614 29.94670
H_panel2 56.61476 66.27062

Replicate data clustering

## Aggregation function missing: defaulting to length